Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl5339S ribosomal protein L53, mitochondrial. (107 aa)    
Predicted Functional Partners:
mrpl12
39S ribosomal protein L12, mitochondrial.
   
 0.987
mrps18a
28S ribosomal protein S18a, mitochondrial.
   
 
 0.978
mrps30
28S ribosomal protein S30, mitochondrial.
    
 
 0.977
mrpl2
39S ribosomal protein L2, mitochondrial.
   
 0.972
mrpl11
39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.970
mrpl10
39S ribosomal protein L10, mitochondrial.
   
 0.969
mrpl52
39S ribosomal protein L52, mitochondrial isoform X2.
   
 
 0.967
mrpl41
39S ribosomal protein L41, mitochondrial.
   
 0.939
gadd45gip1
Growth arrest and DNA damage-inducible proteins-interacting protein 1.
    
   0.930
mrpl42
39S ribosomal protein L42, mitochondrial isoform X2.
   
 0.930
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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