Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubxn6UBX domain-containing protein 6 isoform X1. (438 aa)    
Predicted Functional Partners:
ubxn4
UBX domain-containing protein 4 isoform X1.
    
 0.998
vcp
Transitional Endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.998
ubxn2a
UBX domain-containing protein 2A isoform X4.
    
 0.997
nsfl1c
NSFL1 cofactor p47.
    
 0.996
faf1
FAS-associated factor 1.
    
 
 0.986
ubxn10
UBX domain-containing protein 10.
    
 
 0.985
aspscr1
Tether containing UBX domain for GLUT4 isoform X1.
   
 
 0.979
ubxn8
UBX domain-containing protein 8.
    
 0.978
vcpkmt
Protein-lysine methyltransferase METTL21D.
    
 
 0.971
svip
Small VCP/p97-interacting protein.
    
 0.970
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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