Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108278724Polycomb protein suz12-A-like. (652 aa)    
Predicted Functional Partners:
eed
Polycomb protein EED.
   
 0.987
aebp2
Zinc finger protein AEBP2.
    
 0.987
ezh2
Histone-lysine N-methyltransferase EZH2 isoform X1.
   
 0.971
ezh1
Histone-lysine N-methyltransferase EZH1 isoform X4.
   
 0.971
LOC108265176
Protein Jumonji-like isoform X1.
    
 0.925
jarid2
Protein Jumonji.
    
 0.925
rbbp7
Histone-binding protein RBBP7 isoform X1.
   
 0.924
rbbp4
Histone-binding protein RBBP4.
   
 0.924
suz12
Polycomb protein SUZ12 isoform X1.
  
  
 
0.901
rnf2
E3 ubiquitin-protein ligase RING2.
    
 0.899
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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