Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tbc1d1TBC1 domain family member 1 isoform X2. (1291 aa)    
Predicted Functional Partners:
tbc1d16
TBC1 domain family member 16 isoform X1.
      
 0.849
dgke
Diacylglycerol kinase.
      
 0.849
arhgap17
Rho GTPase-activating protein 17 isoform X1.
      
 0.734
ENSIPUP00000033411
annotation not available
      
 0.641
pla2g6
85/88 kDa calcium-independent phospholipase A2 isoform X1.
      
 0.539
pcgf3
Polycomb group RING finger protein 3 isoform X1.
   
  
 0.520
LOC108269597
Polycomb group RING finger protein 5-A-like.
   
  
 0.516
npepps
Aminopeptidase.
     
 0.497
lnpep
Leucyl-cystinyl aminopeptidase.
     
 0.497
erap2
Aminopeptidase.
     
 0.497
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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