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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d1TBC1 domain family member 1 isoform X2. (1291 aa)    
Predicted Functional Partners:
dgke
Diacylglycerol kinase.
      
 0.807
tbc1d16
TBC1 domain family member 16 isoform X1.
      
 0.750
arhgap17
Rho GTPase-activating protein 17 isoform X1.
      
 0.605
ENSIPUP00000033411
annotation not available
   
  
 0.571
LOC108269597
Polycomb group RING finger protein 5-A-like.
   
  
 0.505
pcgf3
Polycomb group RING finger protein 3 isoform X1.
   
  
 0.501
pla2g6
85/88 kDa calcium-independent phospholipase A2 isoform X1.
      
 0.488
pcgf5
Polycomb group RING finger protein 5-A.
   
  
 0.465
wdr5
WD repeat-containing protein 5.
    
 
 0.465
l3mbtl2
Lethal(3)malignant brain tumor-like protein 2.
      
 0.461
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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