Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem241Transmembrane protein 241 isoform X1. (297 aa)    
Predicted Functional Partners:
slc35e4
Solute carrier family 35 member E4 isoform X2.
      
 0.710
ankrd29
Ankyrin repeat domain-containing protein 29.
      
 0.710
riok2
Serine/threonine-protein kinase RIO2.
      
 0.707
tmem234
Transmembrane protein 234.
      
 0.699
mysm1
Histone H2A deubiquitinase MYSM1.
   
 
 0.696
thoc1
LOW QUALITY PROTEIN: THO complex subunit 1.
      
 0.676
mllt11
Protein AF1q.
      
 0.635
LOC108260977
Transmembrane protein 144-like.
      
 0.629
mrpl21
39S ribosomal protein L21, mitochondrial.
      
 0.629
cdh22
Cadherin-22; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.615
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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