Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hdgfl2Hepatoma-derived growth factor-related protein 2. (651 aa)    
Predicted Functional Partners:
ENSIPUP00000031489
Pogo transposable element derived with ZNF domain a.
   
 
 0.778
ENSIPUP00000036248
Pogo transposable element derived with ZNF domain b.
   
 
 0.778
poldip3
Polymerase delta-interacting protein 3 isoform X2.
   
 
 0.676
mrpl15
Mitochondrial 39S ribosomal protein L15.
      
 0.629
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
 
 0.621
LOC108257188
Zinc finger protein 516-like isoform X1.
    
 
 0.620
wfikkn2
WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 2 isoform X1.
      
 0.555
cdk13
Cyclin-dependent kinase 13.
    
 
 0.527
cdk12
Cyclin-dependent kinase 12.
    
 
 0.527
popdc3
Popeye domain-containing protein 3.
      
 0.523
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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