Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108262582Histone H1-like. (102 aa)    
Predicted Functional Partners:
cdk5
Cell division protein kinase 5; Belongs to the protein kinase superfamily.
    
  0.441
LOC108264572
Histone H1.0.
   
 0.438
hmgb2
High mobility group protein B2.
    
 0.432
hmgb1
High mobility group protein B1.
    
 0.432
LOC100304841
High mobility group-T protein.
    
 0.432
LOC108279347
High mobility group protein B3-like isoform X1.
    
 0.432
tfam
Transcription factor A, mitochondrial.
    
 0.431
LOC108276547
Histone H2A; Belongs to the histone H2A family.
   
 
 0.423
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.423
LOC108255943
Histone H2A.V.
   
 
 0.423
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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