Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154666Matrin-3. (1087 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K isoform X2.
   
 
 0.785
LOC108260302
Heterogeneous nuclear ribonucleoprotein K-like isoform X1.
   
 
 0.785
hnrnpm
Heterogeneous nuclear ribonucleoprotein M isoform X2.
   
 0.683
LOC108271795
TAR DNA-binding protein 43-like isoform X3.
   
 0.670
nono
non-POU domain-containing octamer-binding protein.
   
 
 0.608
LOC108258933
Paraspeckle component 1-like isoform X2.
   
 
 0.607
sil1
Nucleotide exchange factor SIL1 isoform X1.
    
 
 0.586
atxn2
Ataxin-2 isoform X8.
    
 
 0.569
ccnf
Cyclin-F; Belongs to the cyclin family.
    
 0.568
Taf15
TATA-box binding protein associated factor 15.
   
 
 0.565
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.