Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crlf3Cytokine receptor-like factor 3. (444 aa)    
Predicted Functional Partners:
utp6
U3 small nucleolar RNA-associated protein 6 homolog.
      
 0.912
phf5a
PHD finger-like domain-containing protein 5A.
      
 0.872
LOC108257071
arf-GAP with dual PH domain-containing protein 2-like isoform X1.
      
 0.754
LOC108272708
Spermatid perinuclear RNA-binding protein-like isoform X1.
      
 0.708
tefm
Transcription elongation factor, mitochondrial.
      
 0.684
api5
Apoptosis inhibitor 5.
      
 0.677
tp53bp1
Tumor suppressor p53-binding protein 1 isoform X3.
      
 0.661
LOC108255279
Calcium-binding and coiled-coil domain-containing protein 1-like isoform X1.
      
 0.650
LOC108275893
Calcium-binding and coiled-coil domain-containing protein 1-like isoform X1.
      
 0.650
ilf3
Interleukin enhancer-binding factor 3.
      
 0.647
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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