Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
atxn1Ataxin-1. (764 aa)    
Predicted Functional Partners:
rbpj
Recombining binding protein suppressor of hairless.
    
  0.915
LOC108260898
Recombining binding protein suppressor of hairless-like.
    
  0.915
LOC108271532
Recombining binding protein suppressor of hairless-like protein isoform X2.
    
  0.911
LOC108272903
Protein capicua homolog isoform X1.
    
 
 0.817
cic
Protein capicua homolog isoform X1.
    
 
 0.817
ENSIPUP00000017165
annotation not available
      
 0.670
atxn2
Ataxin-2 isoform X8.
   
 
 0.648
coil
Coilin.
    
 
 0.636
nap1l1
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
      
 0.635
pdzd2
PDZ domain-containing protein 2 isoform X1.
      
 0.624
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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