Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC108258284Glutamate receptor ionotropic, NMDA 2A-like. (1453 aa)    
Predicted Functional Partners:
grin1
Glutamate receptor ionotropic, NMDA 1 isoform X2.
   
0.919
LOC108278500
Glutamate receptor ionotropic, NMDA 1-like isoform X3.
   
0.894
GRIN3A
Glutamate receptor ionotropic, NMDA 3A.
   
 0.742
LOC108273492
Glutamate receptor ionotropic, NMDA 2C-like.
  
  
 
0.721
LOC108258482
Glutamate receptor ionotropic, NMDA 2B-like.
     
 
0.713
LOC108276343
Glutamate receptor ionotropic, NMDA 2D-like.
     
 
0.666
LOC108272392
Glutamate receptor ionotropic, NMDA 2D-like; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
     
 
0.666
LOC108273092
Peripheral plasma membrane protein CASK-like isoform X9; Belongs to the MAGUK family.
   
 0.664
cask
Peripheral plasma membrane protein CASK isoform X7; Belongs to the MAGUK family.
   
 0.664
LOC108272399
Glutamate receptor ionotropic, NMDA 2B-like.
     
 
0.623
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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