STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000001987annotation not available (85 aa)    
Predicted Functional Partners:
pgbd5
PiggyBac transposable element-derived protein 5.
    
 
 0.661
mphosph6
M-phase phosphoprotein 6.
      
 0.601
mrps2
28S ribosomal protein S2, mitochondrial.
   
 0.481
ppp1r26
Protein phosphatase 1 regulatory subunit 26.
   
 0.481
efcab2
EF-hand calcium-binding domain-containing protein 2.
    
 0.447
rnf170
E3 ubiquitin-protein ligase RNF170.
      
 0.416
slc25a27
Mitochondrial uncoupling protein 4 isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.410
tmem134
Transmembrane protein 134.
      
 0.407
ENSIPUP00000018917
annotation not available
   
 0.401
LOC108281008
Histone-lysine N-methyltransferase SETMAR.
   
 0.401
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.