Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
paip2bPolyadenylate-binding protein-interacting protein 2B. (135 aa)    
Predicted Functional Partners:
ubr5
E3 ubiquitin-protein ligase UBR5 isoform X4.
    
 
 0.689
LOC108254956
Eukaryotic translation initiation factor 4 gamma 3-like isoform X6.
   
 
 0.404
LOC108280304
Eukaryotic translation initiation factor 4 gamma 1-like isoform X2.
   
 
 0.404
LOC108280982
LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1-like.
   
 
 0.404
eif4g1
Eukaryotic translation initiation factor 4 gamma 1 isoform X1.
   
 
 0.404
eif4g3
Eukaryotic translation initiation factor 4 gamma 3 isoform X5.
   
 
 0.404
paip1
Polyadenylate-binding protein-interacting protein 1 isoform X1.
   
 
 0.404
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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