Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
caskin1Caskin-1 isoform X5. (395 aa)    
Predicted Functional Partners:
LOC108273092
Peripheral plasma membrane protein CASK-like isoform X9; Belongs to the MAGUK family.
   
 0.936
cask
Peripheral plasma membrane protein CASK isoform X7; Belongs to the MAGUK family.
   
 0.936
mpp1
55 kDa erythrocyte membrane protein; Belongs to the MAGUK family.
    
 0.783
atp5pd
ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]
    
 
 0.674
bricd5
BRICHOS domain-containing protein 5 isoform X2.
      
 0.629
fahd1
Acylpyruvase FAHD1, mitochondrial.
      
 0.629
dlgap3
Disks large-associated protein 3.
   
 0.598
rnf151
RING finger protein 151.
    
 0.583
ptpn23
Tyrosine-protein phosphatase non-receptor type 23 isoform X3.
   
 0.506
LOC108257436
Tyrosine-protein phosphatase non-receptor type 23-like isoform X1.
   
 0.506
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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