STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dusp12Dual specificity protein phosphatase 12. (315 aa)    
Predicted Functional Partners:
xylb
Xylulose kinase isoform X1.
   
   0.726
bard1
BRCA1-associated RING domain protein 1.
    
 0.717
ddx4
Probable ATP-dependent RNA helicase DDX4 isoform X2; Belongs to the DEAD box helicase family.
   
 
 0.687
lmo1
Rhombotin-1.
    
 
 0.664
hsd17b12
Very-long-chain 3-oxoacyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.657
dh12b
Estradiol 17-beta-dehydrogenase 12-B; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.657
hace1
E3 ubiquitin-protein ligase HACE1.
      
 0.629
brinp1
BMP/retinoic acid-inducible neural-specific protein 1 isoform X1.
      
 0.628
commd10
COMM domain-containing protein 10.
      
 0.627
ccnh
Cyclin-H; Belongs to the cyclin family.
    
   0.604
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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