Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000002007annotation not available (133 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
    
 0.830
uba52
ubiquitin-60S ribosomal protein L40 isoform X1.
    
 0.715
rps27a
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]
   
 0.693
LOC108262617
Histone H2B-like.
  
 0.675
LOC108262673
Histone H2B; Belongs to the histone H2B family.
  
 0.675
LOC108272324
Histone H2B; Belongs to the histone H2B family.
  
 0.675
ENSIPUP00000011444
annotation not available
  
 0.675
ENSIPUP00000009144
Histone H2B 3.
  
 0.674
LOC108261964
Histone H2B; Belongs to the histone H2B family.
  
 0.674
LOC108262131
Histone H2B-like.
  
 0.673
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: low (22%) [HD]