ENSIPUP00000002016 protein (Ictalurus punctatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSIPUP00000002016

Utrophin-like. (232 aa)

Predicted Functional Partners:

ENSIPUP00000013397

0.929

dag1

0.766

LOC108265115

0.766

sspn

0.728

sgcg

0.704

LOC108268520

0.688

sntb1

0.657

snta1

0.657

LOC108273949

0.654

sntg1

0.648

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000002016	ENSIPUP00000013397	ENSIPUP00000002016	ENSIPUP00000013397	Utrophin-like.	annotation not available	0.929
ENSIPUP00000002016	LOC108265115	ENSIPUP00000002016	ENSIPUP00000037307	Utrophin-like.	Dystroglycan-like isoform X1.	0.766
ENSIPUP00000002016	LOC108268520	ENSIPUP00000002016	ENSIPUP00000012521	Utrophin-like.	Beta-2-syntrophin-like.	0.688
ENSIPUP00000002016	LOC108273949	ENSIPUP00000002016	ENSIPUP00000022258	Utrophin-like.	Alpha-sarcoglycan-like.	0.654
ENSIPUP00000002016	dag1	ENSIPUP00000002016	ENSIPUP00000012021	Utrophin-like.	Dystroglycan.	0.766
ENSIPUP00000002016	sgcg	ENSIPUP00000002016	ENSIPUP00000032162	Utrophin-like.	Gamma-sarcoglycan.	0.704
ENSIPUP00000002016	snta1	ENSIPUP00000002016	ENSIPUP00000036640	Utrophin-like.	Alpha-1-syntrophin.	0.657
ENSIPUP00000002016	sntb1	ENSIPUP00000002016	ENSIPUP00000013690	Utrophin-like.	Beta-1-syntrophin.	0.657
ENSIPUP00000002016	sntg1	ENSIPUP00000002016	ENSIPUP00000000149	Utrophin-like.	Gamma-1-syntrophin isoform X2.	0.648
ENSIPUP00000002016	sspn	ENSIPUP00000002016	ENSIPUP00000026902	Utrophin-like.	Sarcospan.	0.728
ENSIPUP00000013397	ENSIPUP00000002016	ENSIPUP00000013397	ENSIPUP00000002016	annotation not available	Utrophin-like.	0.929
ENSIPUP00000013397	LOC108265115	ENSIPUP00000013397	ENSIPUP00000037307	annotation not available	Dystroglycan-like isoform X1.	0.766
ENSIPUP00000013397	LOC108268520	ENSIPUP00000013397	ENSIPUP00000012521	annotation not available	Beta-2-syntrophin-like.	0.657
ENSIPUP00000013397	LOC108273949	ENSIPUP00000013397	ENSIPUP00000022258	annotation not available	Alpha-sarcoglycan-like.	0.654
ENSIPUP00000013397	dag1	ENSIPUP00000013397	ENSIPUP00000012021	annotation not available	Dystroglycan.	0.766
ENSIPUP00000013397	sgcg	ENSIPUP00000013397	ENSIPUP00000032162	annotation not available	Gamma-sarcoglycan.	0.704
ENSIPUP00000013397	snta1	ENSIPUP00000013397	ENSIPUP00000036640	annotation not available	Alpha-1-syntrophin.	0.657
ENSIPUP00000013397	sntb1	ENSIPUP00000013397	ENSIPUP00000013690	annotation not available	Beta-1-syntrophin.	0.657
ENSIPUP00000013397	sntg1	ENSIPUP00000013397	ENSIPUP00000000149	annotation not available	Gamma-1-syntrophin isoform X2.	0.648
ENSIPUP00000013397	sspn	ENSIPUP00000013397	ENSIPUP00000026902	annotation not available	Sarcospan.	0.727