Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
elocTranscription elongation factor B polypeptide 1 isoform X1; Belongs to the SKP1 family. (112 aa)    
Predicted Functional Partners:
cul2
Cullin-2 isoform X1; Belongs to the cullin family.
   
 0.999
cul5
Cullin-5 isoform X1; Belongs to the cullin family.
    
 0.999
vhl
Von Hippel-Lindau disease tumor suppressor.
   
 0.998
rnf7
RING-box protein 2.
   
 0.997
ubxn7
UBX domain-containing protein 7.
   
 0.997
LOC108280902
Transcription elongation factor B polypeptide 2-like.
   
 0.991
elob
Transcription Elongation factor B polypeptide 2.
   
 0.991
socs1
Suppressor of cytokine signaling 1.
    
 0.989
LOC108279000
E3 ubiquitin-protein ligase RBX1-like.
   
 0.986
rbx1
E3 ubiquitin-protein ligase RBX1.
   
 0.986
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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