Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zcchc7Zinc finger CCHC domain-containing protein 7. (553 aa)    
Predicted Functional Partners:
mtrex
Superkiller viralicidic activity 2-like 2.
   
 0.981
tent4b
Non-canonical poly(A) RNA polymerase PAPD5.
   
 0.949
LOC108278538
Non-canonical poly(A) RNA polymerase PAPD7-like.
   
 0.925
LOC108273366
Non-canonical poly(A) RNA polymerase PAPD7-like isoform X1.
   
 0.925
ncbp1
Nuclear cap-binding protein subunit 1 isoform X1.
    
 
 0.835
pum3
Pumilio homolog 3.
   
   0.815
rbm7
RNA-binding protein 7.
   
  
 0.746
zfc3h1
LOW QUALITY PROTEIN: zinc finger C3H1 domain-containing protein.
   
  
 0.725
exosc10
Exosome component 10.
   
 0.724
c1d
Nuclear nucleic acid-binding protein C1D isoform X2.
   
 0.721
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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