Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108274290Usher syndrome type-1G protein homolog. (438 aa)    
Predicted Functional Partners:
ush1c
Harmonin.
   
 0.953
cdh23
Cadherin-23.
   
 0.667
LOC108279357
Unconventional myosin-VIIa-like isoform X2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.635
myo7a
Unconventional myosin-VIIa isoform X2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.635
adgrv1
G-protein coupled receptor 98; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.555
whrn
Whirlin isoform X1.
    
 0.551
ush2a
Usherin.
    
 0.550
grxcr2
Glutaredoxin domain-containing cysteine-rich protein 2.
     
 0.547
LOC108263819
Protocadherin-15-like isoform X1.
   
 0.536
LOC108273410
Protocadherin-15-like isoform X2.
   
 0.536
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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