pde6a protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pde6a

Phosphodiesterase. (858 aa)

Predicted Functional Partners:

pde6g

0.995

LOC108275843

0.967

LOC108279216

0.956

LOC108271583

0.940

nt5e

0.897

LOC108257427

0.896

LOC108265815

0.884

ENSIPUP00000025550

0.884

LOC108272812

0.881

adcy3

0.871

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000025550	LOC108257427	ENSIPUP00000025550	ENSIPUP00000033926	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.982
ENSIPUP00000025550	LOC108265815	ENSIPUP00000025550	ENSIPUP00000005830	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	0.900
ENSIPUP00000025550	LOC108271583	ENSIPUP00000025550	ENSIPUP00000001239	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.914
ENSIPUP00000025550	LOC108275843	ENSIPUP00000025550	ENSIPUP00000014545	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like.	0.837
ENSIPUP00000025550	LOC108279216	ENSIPUP00000025550	ENSIPUP00000006795	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Phosphodiesterase.	0.861
ENSIPUP00000025550	adcy3	ENSIPUP00000025550	ENSIPUP00000025724	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.612
ENSIPUP00000025550	pde6a	ENSIPUP00000025550	ENSIPUP00000002155	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Phosphodiesterase.	0.884
ENSIPUP00000025550	pde6g	ENSIPUP00000025550	ENSIPUP00000010452	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma.	0.948
LOC108257427	ENSIPUP00000025550	ENSIPUP00000033926	ENSIPUP00000025550	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	0.982
LOC108257427	LOC108265815	ENSIPUP00000033926	ENSIPUP00000005830	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	0.982
LOC108257427	LOC108271583	ENSIPUP00000033926	ENSIPUP00000001239	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.990
LOC108257427	LOC108275843	ENSIPUP00000033926	ENSIPUP00000014545	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like.	0.895
LOC108257427	LOC108279216	ENSIPUP00000033926	ENSIPUP00000006795	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.811
LOC108257427	adcy3	ENSIPUP00000033926	ENSIPUP00000025724	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Adenylate cyclase; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.770
LOC108257427	pde6a	ENSIPUP00000033926	ENSIPUP00000002155	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Phosphodiesterase.	0.896
LOC108257427	pde6g	ENSIPUP00000033926	ENSIPUP00000010452	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma.	0.901
LOC108265815	ENSIPUP00000025550	ENSIPUP00000005830	ENSIPUP00000025550	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	Guanine nucleotide-binding protein G(t) subunit alpha-3-like.	0.900
LOC108265815	LOC108257427	ENSIPUP00000005830	ENSIPUP00000033926	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.982
LOC108265815	LOC108271583	ENSIPUP00000005830	ENSIPUP00000001239	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.915
LOC108265815	LOC108275843	ENSIPUP00000005830	ENSIPUP00000014545	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like.	0.837