Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
irf2bp1Interferon regulatory factor 2-binding protein 1. (600 aa)    
Predicted Functional Partners:
LOC108268627
Interferon regulatory factor 2-like isoform X3.
   
 
 0.918
vgll4
Transcription cofactor vestigial-like protein 4 isoform X1.
    
 
 0.699
LOC108276354
Transcription cofactor vestigial-like protein 4.
    
 
 0.699
LOC108275960
Ephrin type-B receptor 2 isoform X1.
      
 0.677
arl16
ADP-ribosylation factor-like protein 16.
    
 
 0.660
LOC108280685
E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1.
      
 0.653
FMN1
Formin-1-like isoform X1.
      
 0.632
fmn1
Formin-1 isoform X1.
      
 0.632
LOC108278223
Dual specificity tyrosine-phosphorylation-regulated kinase 1A-like.
   
  
 0.631
ccdc9
Coiled-coil domain-containing protein 9 isoform X7.
   
  
 0.623
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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