Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ap3d1AP-3 complex subunit delta-1 isoform X2. (1210 aa)    
Predicted Functional Partners:
ap3b1
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
 0.995
LOC108255511
AP-3 complex subunit mu-2 isoform X1; Belongs to the adaptor complexes medium subunit family.
   
 0.991
LOC108263184
AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
   
 0.991
ap3s2
AP-3 complex subunit sigma-2 isoform X1.
    
 0.984
ap3s1
AP-3 complex subunit sigma-1.
    
 0.984
AP3B2
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
 0.968
vps41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
   
 
 0.901
gak
cyclin-G-associated kinase isoform X2.
   
 0.899
ap2s1
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
   
 0.862
arpin
Upf0552 protein c15orf38-like protein.
    
 0.848
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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