Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
akrHomeobox protein AKR. (240 aa)    
Predicted Functional Partners:
LOC108259569
Mothers against decapentaplegic homolog.
    
 0.969
LOC108264458
Mothers against decapentaplegic homolog.
    
 0.969
smad2
Mothers against decapentaplegic homolog.
    
 0.969
TGIF2
Homeobox protein TGIF2-like isoform X1.
  
  
 
0.903
LOC108272688
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.674
hdac8
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.659
HDAC2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.659
sinhcaf
Protein FAM60A.
   
 
 0.613
nr1d1
Nuclear receptor subfamily 1 group D member 1 isoform X1.
      
 0.579
LOC108256343
pre-B-cell leukemia transcription factor 1-like isoform X1.
    
 0.497
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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