Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
depdc1DEP domain-containing protein 1A isoform X1. (797 aa)    
Predicted Functional Partners:
arhgap19
Rho GTPase-activating protein 19.
   
 
 0.626
aspm
Abnormal spindle-like microcephaly-associated protein isoform X1.
   
  
 0.598
kif14
Kinesin-like protein KIF14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.592
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.568
ccnb1
G2/mitotic-specific cyclin-B1 isoform X2; Belongs to the cyclin family.
   
  
 0.566
kif20a
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.531
cdc20
Cell division cycle protein 20 homolog.
  
  
 0.506
ndufs3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial isoform X1; Belongs to the complex I 30 kDa subunit family.
     
 0.506
dlgap5
Disks large-associated protein 5 isoform X2.
   
  
 0.505
LOC108270194
Rho GTPase-activating protein 11A-like isoform X1.
   
 
 0.497
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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