STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108271836Protein FAM8A1-like. (337 aa)    
Predicted Functional Partners:
sel1l
Protein sel-1 homolog 1 isoform X1.
    
 
 0.609
syvn1
E3 ubiquitin-protein ligase synoviolin.
    
 
 0.567
amfr
E3 ubiquitin-protein ligase AMFR.
    
 
 0.567
tmub1
Transmembrane and Ubiquitin-like domain-containing protein 1.
      
 0.434
LOC108278981
RING finger protein 145-like.
    
 
 0.410
LOC108263473
RING finger protein 145-like isoform X1.
    
 
 0.410
rnf145
RING finger protein 145.
    
 
 0.410
cgrrf1
Cell growth regulator with RING finger domain protein 1 isoform X1.
      
 0.402
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.