Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108265655Collagen alpha-1(II) chain-like isoform X1. (1490 aa)    
Predicted Functional Partners:
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.735
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.735
LOC108279461
Integrin beta; Belongs to the integrin beta chain family.
    
 0.735
itga10
Integrin alpha-10; Belongs to the integrin alpha chain family.
    
 0.732
LOC108275317
Integrin alpha-11-like isoform X1; Belongs to the integrin alpha chain family.
    
 0.732
itga11
Integrin alpha-11; Belongs to the integrin alpha chain family.
    
 0.732
itga2
Integrin alpha-2 isoform X1; Belongs to the integrin alpha chain family.
    
 0.732
itga1
Integrin alpha-1 isoform X1; Belongs to the integrin alpha chain family.
    
 0.732
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.718
itgb1-2
Integrin beta; Belongs to the integrin beta chain family.
    
 0.718
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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