Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fermt3Fermitin family homolog 3. (640 aa)    
Predicted Functional Partners:
fblim1
Filamin-binding LIM protein 1.
    
 0.766
ilk
Integrin-linked protein kinase.
   
 
 0.764
nckap1
Nck-associated protein 1 isoform X3.
   
 
 0.741
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.700
LOC108271744
Integrin beta; Belongs to the integrin beta chain family.
   
 0.662
LOC100304487
Integrin beta.
   
 0.655
fermt2
Fermitin family homolog 2 isoform X3.
    
   0.647
fermt1
Fermitin family homolog 1.
    
   0.647
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.641
itgb8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.630
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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