Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC108267580arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X3. (1149 aa)    
Predicted Functional Partners:
exoc7
Exocyst complex component 7.
     
 0.655
appl1
DCC-interacting protein 13-alpha isoform X3.
   
 
 0.619
appl2
DCC-interacting protein 13-beta.
   
 
 0.619
LOC108256494
Growth factor receptor-bound protein 2.
    
 
 0.598
grb2
Growth factor receptor-bound protein 2 isoform X1.
    
 
 0.598
LOC108270084
arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3-like.
    
   0.535
exoc5
Exocyst complex component 5.
   
 
 0.528
ENSIPUP00000001128
annotation not available
    
 0.504
arf6
ADP-ribosylation factor 6 isoform X1; Belongs to the small GTPase superfamily. Arf family.
    
 0.504
rab11fip3
Rab11 family-interacting protein 3 isoform X1.
    
 0.484
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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