Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101154660Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)    
Predicted Functional Partners:
nop56
Nucleolar protein 56 isoform X3.
   
 0.998
nop58
Nucleolar protein 58 isoform X1.
   
 0.994
utp15
U3 small nucleolar RNA-associated protein 15 homolog.
   
 0.987
fbl
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.986
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.981
rrp9
U3 small nucleolar RNA-interacting protein 2 isoform X2.
   
 0.959
prpf3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.957
ppih
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.957
nop10
H/ACA ribonucleoprotein complex subunit 3.
   
 0.954
lsm7
U6 snRNA-associated Sm-like protein LSm7.
   
 0.953
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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