sec63 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sec63

Translocation protein SEC63 homolog. (763 aa)

Predicted Functional Partners:

sec62

0.999

sec61b

0.996

LOC108272151

0.993

SEC61A1

0.993

SEC61G

0.983

LOC108256481

0.983

hspa5

0.979

srpra

0.966

hyou1

0.949

srp54

0.944

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108256481	LOC108272151	ENSIPUP00000019965	ENSIPUP00000028316	Protein transport protein Sec61 subunit gamma.	Protein transport protein Sec61 subunit alpha-like 1.	0.868
LOC108256481	SEC61A1	ENSIPUP00000019965	ENSIPUP00000034122	Protein transport protein Sec61 subunit gamma.	Protein transport protein Sec61 subunit alpha-like 1.	0.986
LOC108256481	SEC61G	ENSIPUP00000019965	ENSIPUP00000006317	Protein transport protein Sec61 subunit gamma.	Protein transport protein Sec61 subunit gamma.	0.901
LOC108256481	hspa5	ENSIPUP00000019965	ENSIPUP00000029142	Protein transport protein Sec61 subunit gamma.	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.439
LOC108256481	sec61b	ENSIPUP00000019965	ENSIPUP00000028861	Protein transport protein Sec61 subunit gamma.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.999
LOC108256481	sec62	ENSIPUP00000019965	ENSIPUP00000020836	Protein transport protein Sec61 subunit gamma.	Translocation protein SEC62.	0.900
LOC108256481	sec63	ENSIPUP00000019965	ENSIPUP00000004232	Protein transport protein Sec61 subunit gamma.	Translocation protein SEC63 homolog.	0.983
LOC108256481	srp54	ENSIPUP00000019965	ENSIPUP00000002004	Protein transport protein Sec61 subunit gamma.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.474
LOC108256481	srpra	ENSIPUP00000019965	ENSIPUP00000001209	Protein transport protein Sec61 subunit gamma.	Signal recognition particle receptor subunit alpha isoform X1.	0.535
LOC108272151	LOC108256481	ENSIPUP00000028316	ENSIPUP00000019965	Protein transport protein Sec61 subunit alpha-like 1.	Protein transport protein Sec61 subunit gamma.	0.868
LOC108272151	SEC61G	ENSIPUP00000028316	ENSIPUP00000006317	Protein transport protein Sec61 subunit alpha-like 1.	Protein transport protein Sec61 subunit gamma.	0.868
LOC108272151	hspa5	ENSIPUP00000028316	ENSIPUP00000029142	Protein transport protein Sec61 subunit alpha-like 1.	78 kDa glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.893
LOC108272151	hyou1	ENSIPUP00000028316	ENSIPUP00000009114	Protein transport protein Sec61 subunit alpha-like 1.	Hypoxia up-regulated protein 1.	0.810
LOC108272151	sec61b	ENSIPUP00000028316	ENSIPUP00000028861	Protein transport protein Sec61 subunit alpha-like 1.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.950
LOC108272151	sec62	ENSIPUP00000028316	ENSIPUP00000020836	Protein transport protein Sec61 subunit alpha-like 1.	Translocation protein SEC62.	0.891
LOC108272151	sec63	ENSIPUP00000028316	ENSIPUP00000004232	Protein transport protein Sec61 subunit alpha-like 1.	Translocation protein SEC63 homolog.	0.993
LOC108272151	srp54	ENSIPUP00000028316	ENSIPUP00000002004	Protein transport protein Sec61 subunit alpha-like 1.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.675
LOC108272151	srpra	ENSIPUP00000028316	ENSIPUP00000001209	Protein transport protein Sec61 subunit alpha-like 1.	Signal recognition particle receptor subunit alpha isoform X1.	0.661
SEC61A1	LOC108256481	ENSIPUP00000034122	ENSIPUP00000019965	Protein transport protein Sec61 subunit alpha-like 1.	Protein transport protein Sec61 subunit gamma.	0.986
SEC61A1	SEC61G	ENSIPUP00000034122	ENSIPUP00000006317	Protein transport protein Sec61 subunit alpha-like 1.	Protein transport protein Sec61 subunit gamma.	0.986