LOC108265440 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000010130	LOC108264923	ENSIPUP00000010130	ENSIPUP00000032017	annotation not available	Class II histocompatibility antigen, B-L beta chain-like.	0.558
ENSIPUP00000010130	LOC108264928	ENSIPUP00000010130	ENSIPUP00000031092	annotation not available	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.452
ENSIPUP00000010130	LOC108265440	ENSIPUP00000010130	ENSIPUP00000004263	annotation not available	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.453
ENSIPUP00000010130	LOC108265442	ENSIPUP00000010130	ENSIPUP00000004618	annotation not available	H-2 class II histocompatibility antigen, I-E beta chain-like.	0.558
ENSIPUP00000010130	LOC108265443	ENSIPUP00000010130	ENSIPUP00000004325	annotation not available	HLA class II histocompatibility antigen, DR beta 4 chain-like isoform X1.	0.558
LOC100304978	LOC108264923	ENSIPUP00000009373	ENSIPUP00000032017	CD4-like protein 1 isoform X1.	Class II histocompatibility antigen, B-L beta chain-like.	0.901
LOC100304978	LOC108264928	ENSIPUP00000009373	ENSIPUP00000031092	CD4-like protein 1 isoform X1.	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.905
LOC100304978	LOC108265440	ENSIPUP00000009373	ENSIPUP00000004263	CD4-like protein 1 isoform X1.	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.902
LOC100304978	LOC108265442	ENSIPUP00000009373	ENSIPUP00000004618	CD4-like protein 1 isoform X1.	H-2 class II histocompatibility antigen, I-E beta chain-like.	0.919
LOC100304978	LOC108265443	ENSIPUP00000009373	ENSIPUP00000004325	CD4-like protein 1 isoform X1.	HLA class II histocompatibility antigen, DR beta 4 chain-like isoform X1.	0.917
LOC108259964	LOC108264923	ENSIPUP00000033469	ENSIPUP00000032017	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	Class II histocompatibility antigen, B-L beta chain-like.	0.567
LOC108259964	LOC108264928	ENSIPUP00000033469	ENSIPUP00000031092	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.452
LOC108259964	LOC108265440	ENSIPUP00000033469	ENSIPUP00000004263	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.453
LOC108259964	LOC108265442	ENSIPUP00000033469	ENSIPUP00000004618	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	H-2 class II histocompatibility antigen, I-E beta chain-like.	0.567
LOC108259964	LOC108265443	ENSIPUP00000033469	ENSIPUP00000004325	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	HLA class II histocompatibility antigen, DR beta 4 chain-like isoform X1.	0.567
LOC108264923	ENSIPUP00000010130	ENSIPUP00000032017	ENSIPUP00000010130	Class II histocompatibility antigen, B-L beta chain-like.	annotation not available	0.558
LOC108264923	LOC100304978	ENSIPUP00000032017	ENSIPUP00000009373	Class II histocompatibility antigen, B-L beta chain-like.	CD4-like protein 1 isoform X1.	0.901
LOC108264923	LOC108259964	ENSIPUP00000032017	ENSIPUP00000033469	Class II histocompatibility antigen, B-L beta chain-like.	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.567
LOC108264923	LOC108264928	ENSIPUP00000032017	ENSIPUP00000031092	Class II histocompatibility antigen, B-L beta chain-like.	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.779
LOC108264923	LOC108265440	ENSIPUP00000032017	ENSIPUP00000004263	Class II histocompatibility antigen, B-L beta chain-like.	H-2 class II histocompatibility antigen, A-U alpha chain-like.	0.585