Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tbl1xr1F-box-like/WD repeat-containing protein TBL1XR1. (532 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta-1 isoform X3.
   
 0.961
LOC108256545
Catenin beta-1-like.
   
 0.961
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.938
hdac3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.936
apc
Adenomatous polyposis coli protein isoform X1.
    
  0.908
apc2
Adenomatous polyposis coli protein 2.
    
  0.908
LOC108267995
F-box-like/WD repeat-containing protein TBL1XR1.
  
  
 
0.900
ncor2
Nuclear receptor corepressor 2 isoform X2.
   
 0.893
ncor1
Nuclear receptor corepressor 1 isoform X16.
   
 0.893
sirt1
NAD-dependent protein deacetylase sirtuin-1 isoform X3.
   
 0.848
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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