Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108266736Apolipoprotein A-I-like. (255 aa)    
Predicted Functional Partners:
apob
Apolipoprotein B-100.
   
 0.970
LOC108257904
Apolipoprotein B-100-like.
   
 0.970
lcat
Phosphatidylcholine-sterol acyltransferase isoform X1.
   
 0.936
LOC108265499
Apolipoprotein Eb-like.
  
0.868
LOC108272669
Apolipoprotein Eb-like.
  
0.868
LOC108267234
Uncharacterized protein LOC108267234.
   
 0.854
cetp
Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.
   
 0.845
apoc1
Apolipoprotein C-I.
   
 0.797
pltp
Phospholipid transfer protein.
   
 0.775
scarb1
Scavenger receptor class B member 1 isoform X1; Belongs to the CD36 family.
    
 0.769
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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