STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
t179bTransmembrane protein 179b isoform X1. (221 aa)    
Predicted Functional Partners:
yars1
Tyrosine--tRNA ligase.
  
  
 0.872
eprs1
Bifunctional glutamate/proline--tRNA ligase.
  
 
 0.844
vars1
valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.779
kti12
Protein KTI12 homolog.
     
 0.718
palb2
Partner and localizer of BRCA2 isoform X2.
   
 
 0.656
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.656
LOC108258021
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.656
kars1
Lysine--tRNA ligase.
  
 
 0.652
mars
methionine--tRNA ligase, cytoplasmic isoform X3.
  
 
 0.636
ENSIPUP00000036453
methionyl-tRNA synthetase 1.
  
 
 0.636
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.