Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cbx3Chromobox protein homolog 3 isoform X2. (209 aa)    
Predicted Functional Partners:
cbx3-2
Chromobox protein-like protein 3 isoform X2.
  
  
 
0.904
LOC108276547
Histone H2A; Belongs to the histone H2A family.
   
 0.617
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 0.617
LOC108255943
Histone H2A.V.
   
 0.617
rnf2
E3 ubiquitin-protein ligase RING2.
    
 0.615
chaf1a
Chromatin assembly factor 1 subunit A isoform X1.
   
 
 0.613
emsy
BRCA2-interacting transcriptional repressor EMSY.
    
 
 0.580
chaf1b
Chromatin assembly factor 1 subunit B.
    
 
 0.498
pola1
DNA polymerase.
   
 
 0.498
LOC108257176
F-box/LRR-repeat protein 19-like isoform X1.
    
 
 0.486
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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