Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chm4cCharged multivesicular body protein 4C. (236 aa)    
Predicted Functional Partners:
chmp7
Charged multivesicular body protein 7.
    
 0.987
pdcd6ip
Programmed cell death 6-interacting protein isoform X2.
   
 0.985
vps25
Vacuolar protein-sorting-associated protein 25.
    
 0.960
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.956
chmp2a
Charged multivesicular body protein 2A.
   
 0.951
vps36
Vacuolar protein-sorting-associated protein 36.
    
 0.948
chmp3
Charged multivesicular body protein 3.
   
 0.944
LOC108277388
Charged multivesicular body protein 6-like isoform X2.
   
0.933
chmp6
Charged multivesicular body protein 6.
   
0.933
ist1
IST1 homolog isoform X1.
   
 0.922
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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