Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC108268333Diamine acetyltransferase 2-like isoform X1. (171 aa)    
Predicted Functional Partners:
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
    
 0.934
odc1
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.916
LOC108269975
Ornithine decarboxylase-like; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.916
aoc1
Amine oxidase.
     
 0.912
LOC108276518
Amine oxidase.
     
 0.903
LOC108266753
Amine oxidase.
     
 0.903
tcf25
Transcription factor 25.
    
   0.673
rbm17
Splicing factor 45.
    
   0.509
mdh2
Malate dehydrogenase.
     
 0.480
hmgcl
hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1.
      
 0.479
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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