Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108265594semaphorin-3F-like; Belongs to the semaphorin family. (745 aa)    
Predicted Functional Partners:
LOC108276113
E3 ubiquitin-protein ligase.
     
  0.536
LOC108271999
E3 ubiquitin-protein ligase.
     
  0.536
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.527
LOC108272036
Macrophage-stimulating protein receptor-like.
   
 0.524
met
Hepatocyte growth factor receptor isoform X1.
   
 0.524
mst1r
Macrophage-stimulating protein receptor.
   
 0.524
LOC108266767
Neuropilin; Belongs to the neuropilin family.
    
 
 0.474
LOC108280422
Neuropilin-1a-like isoform X3.
    
 0.402
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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