STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox6Transcription factor SOX-6 isoform X7. (759 aa)    
Predicted Functional Partners:
ENSIPUP00000036008
annotation not available
   
 
 0.986
ctnnb1
Catenin beta-1 isoform X3.
   
 0.863
LOC108256545
Catenin beta-1-like.
   
 0.863
dmrt1
Doublesex- and mab-3-related transcription factor 1 isoform X2.
    
 
 0.752
foxj3
Forkhead box protein J3.
    
 
 0.702
sox13
Transcription factor SOX-13 isoform X1.
    
 
 0.689
trip12
E3 ubiquitin-protein ligase TRIP12.
    
   0.661
LOC108270763
Junction plakoglobin-like isoform X1.
   
  0.650
LOC108257253
Junction plakoglobin-like.
   
  0.650
LOC108268788
Aggrecan core protein-like.
    
 
 0.616
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.