Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ttll7Tubulin polyglutamylase TTLL7. (932 aa)    
Predicted Functional Partners:
svbp
Small vasohibin-binding protein.
      
 0.706
ttll5
Tubulin polyglutamylase TTLL5 isoform X1.
   
  
 0.658
LOC108263641
Centriole, cilia and spindle-associated protein-like isoform X1.
      
 0.628
LOC108272579
Dysbindin-like isoform X1.
      
 0.557
efcab2
EF-hand calcium-binding domain-containing protein 2.
      
 0.478
cdc42ep1
Cdc42 effector protein 1.
      
 0.475
tfap2d
Transcription factor AP-2-delta.
      
 0.475
LOC108276977
Ras-specific guanine nucleotide-releasing factor 2-like isoform X3.
      
 0.473
znf280d
Zinc finger protein 280D.
      
 0.473
znf142
Zinc finger protein 142.
      
 0.472
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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