bbs9 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000015716	bbs1	ENSIPUP00000015716	ENSIPUP00000031757	BBSome interacting protein 1.	Bardet-Biedl syndrome 1 protein isoform X1.	0.946
ENSIPUP00000015716	bbs10	ENSIPUP00000015716	ENSIPUP00000006655	BBSome interacting protein 1.	Bardet-Biedl syndrome 10 protein.	0.721
ENSIPUP00000015716	bbs12	ENSIPUP00000015716	ENSIPUP00000011312	BBSome interacting protein 1.	Bardet-Biedl syndrome 12 protein isoform X2.	0.764
ENSIPUP00000015716	bbs2	ENSIPUP00000015716	ENSIPUP00000028426	BBSome interacting protein 1.	Bardet-Biedl syndrome 2 protein homolog.	0.938
ENSIPUP00000015716	bbs4	ENSIPUP00000015716	ENSIPUP00000016583	BBSome interacting protein 1.	Bardet-Biedl syndrome 4 protein.	0.789
ENSIPUP00000015716	bbs5	ENSIPUP00000015716	ENSIPUP00000015005	BBSome interacting protein 1.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.902
ENSIPUP00000015716	bbs7	ENSIPUP00000015716	ENSIPUP00000024554	BBSome interacting protein 1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.955
ENSIPUP00000015716	bbs9	ENSIPUP00000015716	ENSIPUP00000005328	BBSome interacting protein 1.	Protein PTHB1 isoform X2.	0.950
ENSIPUP00000015716	lztfl1	ENSIPUP00000015716	ENSIPUP00000005533	BBSome interacting protein 1.	Leucine zipper transcription factor-like protein 1 isoform X1.	0.738
ENSIPUP00000015716	ttc8	ENSIPUP00000015716	ENSIPUP00000010721	BBSome interacting protein 1.	Tetratricopeptide repeat protein 8 isoform X1.	0.919
bbs1	ENSIPUP00000015716	ENSIPUP00000031757	ENSIPUP00000015716	Bardet-Biedl syndrome 1 protein isoform X1.	BBSome interacting protein 1.	0.946
bbs1	bbs10	ENSIPUP00000031757	ENSIPUP00000006655	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 10 protein.	0.947
bbs1	bbs12	ENSIPUP00000031757	ENSIPUP00000011312	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 12 protein isoform X2.	0.911
bbs1	bbs2	ENSIPUP00000031757	ENSIPUP00000028426	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 2 protein homolog.	0.999
bbs1	bbs4	ENSIPUP00000031757	ENSIPUP00000016583	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 4 protein.	0.999
bbs1	bbs5	ENSIPUP00000031757	ENSIPUP00000015005	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.994
bbs1	bbs7	ENSIPUP00000031757	ENSIPUP00000024554	Bardet-Biedl syndrome 1 protein isoform X1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.999
bbs1	bbs9	ENSIPUP00000031757	ENSIPUP00000005328	Bardet-Biedl syndrome 1 protein isoform X1.	Protein PTHB1 isoform X2.	0.999
bbs1	lztfl1	ENSIPUP00000031757	ENSIPUP00000005533	Bardet-Biedl syndrome 1 protein isoform X1.	Leucine zipper transcription factor-like protein 1 isoform X1.	0.979
bbs1	ttc8	ENSIPUP00000031757	ENSIPUP00000010721	Bardet-Biedl syndrome 1 protein isoform X1.	Tetratricopeptide repeat protein 8 isoform X1.	0.999