ENSIPUP00000005350 protein (Ictalurus punctatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSIPUP00000005350

annotation not available (575 aa)

Predicted Functional Partners:

dctn2

0.616

LOC108266093

0.592

ENSIPUP00000005323

0.556

LOC108263710

0.523

LOC108260758

0.523

LOC108257478

0.508

dync1li2

0.508

dctn5

0.492

ENSIPUP00000020367

0.492

dctn6

0.491

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000005323	ENSIPUP00000005350	ENSIPUP00000005323	ENSIPUP00000005350	Dynein heavy chain 3, axonemal-like.	annotation not available	0.556
ENSIPUP00000005323	LOC108257478	ENSIPUP00000005323	ENSIPUP00000017891	Dynein heavy chain 3, axonemal-like.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.508
ENSIPUP00000005323	LOC108260758	ENSIPUP00000005323	ENSIPUP00000019253	Dynein heavy chain 3, axonemal-like.	Dynactin subunit 1-like isoform X1.	0.523
ENSIPUP00000005323	LOC108263710	ENSIPUP00000005323	ENSIPUP00000012726	Dynein heavy chain 3, axonemal-like.	Dynactin subunit 1-like isoform X1.	0.523
ENSIPUP00000005323	LOC108266093	ENSIPUP00000005323	ENSIPUP00000009421	Dynein heavy chain 3, axonemal-like.	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	0.596
ENSIPUP00000005323	dctn2	ENSIPUP00000005323	ENSIPUP00000036460	Dynein heavy chain 3, axonemal-like.	Dynactin subunit 2 isoform X2.	0.616
ENSIPUP00000005323	dctn5	ENSIPUP00000005323	ENSIPUP00000002157	Dynein heavy chain 3, axonemal-like.	Dynactin subunit 5 isoform X2.	0.492
ENSIPUP00000005323	dctn6	ENSIPUP00000005323	ENSIPUP00000018567	Dynein heavy chain 3, axonemal-like.	Dynactin subunit 6.	0.491
ENSIPUP00000005323	dync1li2	ENSIPUP00000005323	ENSIPUP00000020808	Dynein heavy chain 3, axonemal-like.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.508
ENSIPUP00000005350	ENSIPUP00000005323	ENSIPUP00000005350	ENSIPUP00000005323	annotation not available	Dynein heavy chain 3, axonemal-like.	0.556
ENSIPUP00000005350	ENSIPUP00000020367	ENSIPUP00000005350	ENSIPUP00000020367	annotation not available	annotation not available	0.492
ENSIPUP00000005350	LOC108257478	ENSIPUP00000005350	ENSIPUP00000017891	annotation not available	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.508
ENSIPUP00000005350	LOC108260758	ENSIPUP00000005350	ENSIPUP00000019253	annotation not available	Dynactin subunit 1-like isoform X1.	0.523
ENSIPUP00000005350	LOC108263710	ENSIPUP00000005350	ENSIPUP00000012726	annotation not available	Dynactin subunit 1-like isoform X1.	0.523
ENSIPUP00000005350	LOC108266093	ENSIPUP00000005350	ENSIPUP00000009421	annotation not available	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	0.592
ENSIPUP00000005350	dctn2	ENSIPUP00000005350	ENSIPUP00000036460	annotation not available	Dynactin subunit 2 isoform X2.	0.616
ENSIPUP00000005350	dctn5	ENSIPUP00000005350	ENSIPUP00000002157	annotation not available	Dynactin subunit 5 isoform X2.	0.492
ENSIPUP00000005350	dctn6	ENSIPUP00000005350	ENSIPUP00000018567	annotation not available	Dynactin subunit 6.	0.491
ENSIPUP00000005350	dync1li2	ENSIPUP00000005350	ENSIPUP00000020808	annotation not available	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.508
ENSIPUP00000020367	ENSIPUP00000005350	ENSIPUP00000020367	ENSIPUP00000005350	annotation not available	annotation not available	0.492