LOC108260894 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108260894

Recoverin-like. (203 aa)

Predicted Functional Partners:

grk1

0.991

LOC108260147

0.987

grk7

0.977

LOC108266978

0.905

rcvrn

0.901

RHO

0.862

LOC108280996

0.808

rho

0.808

LOC108265152

0.705

LOC108277214

0.705

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108260147	LOC108260894	ENSIPUP00000032418	ENSIPUP00000005367	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Recoverin-like.	0.987
LOC108260147	LOC108266978	ENSIPUP00000032418	ENSIPUP00000012209	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Visinin-like.	0.987
LOC108260147	LOC108280996	ENSIPUP00000032418	ENSIPUP00000033787	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Rhodopsin.	0.976
LOC108260147	RHO	ENSIPUP00000032418	ENSIPUP00000034356	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Rhodopsin.	0.979
LOC108260147	grk1	ENSIPUP00000032418	ENSIPUP00000015418	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.901
LOC108260147	grk7	ENSIPUP00000032418	ENSIPUP00000022573	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.930
LOC108260147	rcvrn	ENSIPUP00000032418	ENSIPUP00000007770	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Recoverin.	0.985
LOC108260147	rho	ENSIPUP00000032418	ENSIPUP00000036104	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal (By similarity). Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity).	0.976
LOC108260894	LOC108260147	ENSIPUP00000005367	ENSIPUP00000032418	Recoverin-like.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.987
LOC108260894	LOC108265152	ENSIPUP00000005367	ENSIPUP00000003284	Recoverin-like.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.705
LOC108260894	LOC108266978	ENSIPUP00000005367	ENSIPUP00000012209	Recoverin-like.	Visinin-like.	0.905
LOC108260894	LOC108277214	ENSIPUP00000005367	ENSIPUP00000009246	Recoverin-like.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.705
LOC108260894	LOC108280996	ENSIPUP00000005367	ENSIPUP00000033787	Recoverin-like.	Rhodopsin.	0.808
LOC108260894	RHO	ENSIPUP00000005367	ENSIPUP00000034356	Recoverin-like.	Rhodopsin.	0.862
LOC108260894	grk1	ENSIPUP00000005367	ENSIPUP00000015418	Recoverin-like.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
LOC108260894	grk7	ENSIPUP00000005367	ENSIPUP00000022573	Recoverin-like.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.977
LOC108260894	rcvrn	ENSIPUP00000005367	ENSIPUP00000007770	Recoverin-like.	Recoverin.	0.901
LOC108260894	rho	ENSIPUP00000005367	ENSIPUP00000036104	Recoverin-like.	Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal (By similarity). Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity).	0.808
LOC108265152	LOC108260894	ENSIPUP00000003284	ENSIPUP00000005367	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Recoverin-like.	0.705
LOC108265152	LOC108266978	ENSIPUP00000003284	ENSIPUP00000012209	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Visinin-like.	0.705