LOC108275503 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108275503

Acidic leucine-rich nuclear phosphoprotein 32 family member D-like isoform X3. (185 aa)

Predicted Functional Partners:

LOC108279391

0.790

LOC108265615

0.790

LOC108265788

0.694

LOC108255235

0.679

dmap1

0.657

ino80

0.606

LOC108269901

0.600

LOC108258411

0.600

nup214

0.575

LOC108276547

0.571

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255235	LOC108275503	ENSIPUP00000036789	ENSIPUP00000005488	Vacuolar protein sorting-associated protein 72 homolog.	Acidic leucine-rich nuclear phosphoprotein 32 family member D-like isoform X3.	0.679
LOC108255235	LOC108276547	ENSIPUP00000036789	ENSIPUP00000024160	Vacuolar protein sorting-associated protein 72 homolog.	Histone H2A; Belongs to the histone H2A family.	0.813
LOC108255235	dmap1	ENSIPUP00000036789	ENSIPUP00000024084	Vacuolar protein sorting-associated protein 72 homolog.	DNA methyltransferase 1-associated protein 1.	0.993
LOC108255235	ino80	ENSIPUP00000036789	ENSIPUP00000027959	Vacuolar protein sorting-associated protein 72 homolog.	DNA helicase INO80.	0.817
LOC108258411	LOC108265615	ENSIPUP00000036435	ENSIPUP00000019396	Exportin-1-like.	Protein SET-like isoform X1; Belongs to the nucleosome assembly protein (NAP) family.	0.613
LOC108258411	LOC108265788	ENSIPUP00000036435	ENSIPUP00000004866	Exportin-1-like.	Putative testis-specific Y-encoded-like protein 3; Belongs to the nucleosome assembly protein (NAP) family.	0.561
LOC108258411	LOC108269901	ENSIPUP00000036435	ENSIPUP00000019157	Exportin-1-like.	Exportin-1.	0.900
LOC108258411	LOC108275503	ENSIPUP00000036435	ENSIPUP00000005488	Exportin-1-like.	Acidic leucine-rich nuclear phosphoprotein 32 family member D-like isoform X3.	0.600
LOC108258411	LOC108279391	ENSIPUP00000036435	ENSIPUP00000004274	Exportin-1-like.	Protein SET; Belongs to the nucleosome assembly protein (NAP) family.	0.613
LOC108258411	nup214	ENSIPUP00000036435	ENSIPUP00000030286	Exportin-1-like.	Nuclear pore complex protein Nup214 isoform X1.	0.971
LOC108265615	LOC108258411	ENSIPUP00000019396	ENSIPUP00000036435	Protein SET-like isoform X1; Belongs to the nucleosome assembly protein (NAP) family.	Exportin-1-like.	0.613
LOC108265615	LOC108269901	ENSIPUP00000019396	ENSIPUP00000019157	Protein SET-like isoform X1; Belongs to the nucleosome assembly protein (NAP) family.	Exportin-1.	0.613
LOC108265615	LOC108275503	ENSIPUP00000019396	ENSIPUP00000005488	Protein SET-like isoform X1; Belongs to the nucleosome assembly protein (NAP) family.	Acidic leucine-rich nuclear phosphoprotein 32 family member D-like isoform X3.	0.790
LOC108265615	LOC108276547	ENSIPUP00000019396	ENSIPUP00000024160	Protein SET-like isoform X1; Belongs to the nucleosome assembly protein (NAP) family.	Histone H2A; Belongs to the histone H2A family.	0.693
LOC108265615	nup214	ENSIPUP00000019396	ENSIPUP00000030286	Protein SET-like isoform X1; Belongs to the nucleosome assembly protein (NAP) family.	Nuclear pore complex protein Nup214 isoform X1.	0.645
LOC108265788	LOC108258411	ENSIPUP00000004866	ENSIPUP00000036435	Putative testis-specific Y-encoded-like protein 3; Belongs to the nucleosome assembly protein (NAP) family.	Exportin-1-like.	0.561
LOC108265788	LOC108269901	ENSIPUP00000004866	ENSIPUP00000019157	Putative testis-specific Y-encoded-like protein 3; Belongs to the nucleosome assembly protein (NAP) family.	Exportin-1.	0.561
LOC108265788	LOC108275503	ENSIPUP00000004866	ENSIPUP00000005488	Putative testis-specific Y-encoded-like protein 3; Belongs to the nucleosome assembly protein (NAP) family.	Acidic leucine-rich nuclear phosphoprotein 32 family member D-like isoform X3.	0.694
LOC108265788	LOC108276547	ENSIPUP00000004866	ENSIPUP00000024160	Putative testis-specific Y-encoded-like protein 3; Belongs to the nucleosome assembly protein (NAP) family.	Histone H2A; Belongs to the histone H2A family.	0.693
LOC108265788	nup214	ENSIPUP00000004866	ENSIPUP00000030286	Putative testis-specific Y-encoded-like protein 3; Belongs to the nucleosome assembly protein (NAP) family.	Nuclear pore complex protein Nup214 isoform X1.	0.601