STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108274799Eomesodermin-like. (678 aa)    
Predicted Functional Partners:
ascl1
Achaete-scute homolog 1.
   
 0.596
LOC108273808
Forkhead box protein H1-like.
     
 0.497
LOC108272420
Brachyury protein homolog A.
  
 
0.474
tbx21
T-box transcription factor TBX21.
  
 
0.468
LOC108272403
T-box-containing protein TBXT-like isoform X1.
  
 
0.467
tbxt
Brachyury protein.
  
 
0.466
LOC108274084
Dual specificity mitogen-activated protein kinase kinase 6 isoform X1.
   
    0.459
snai2
Zinc finger protein SNAI2.
    
 0.443
mixl1
Homeobox protein MIXL1.
   
 0.413
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.