LOC108272534 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000016025	LOC108272534	ENSIPUP00000016025	ENSIPUP00000006239	annotation not available	Glutamic acid-rich protein-like isoform X1.	0.559
LOC108272534	ENSIPUP00000016025	ENSIPUP00000006239	ENSIPUP00000016025	Glutamic acid-rich protein-like isoform X1.	annotation not available	0.559
LOC108272534	bop1	ENSIPUP00000006239	ENSIPUP00000018074	Glutamic acid-rich protein-like isoform X1.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.437
LOC108272534	cep152	ENSIPUP00000006239	ENSIPUP00000030403	Glutamic acid-rich protein-like isoform X1.	Centrosomal protein of 152 kDa isoform X1.	0.437
LOC108272534	gnl2	ENSIPUP00000006239	ENSIPUP00000025277	Glutamic acid-rich protein-like isoform X1.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.491
LOC108272534	gtpbp4	ENSIPUP00000006239	ENSIPUP00000021346	Glutamic acid-rich protein-like isoform X1.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.445
LOC108272534	pes1	ENSIPUP00000006239	ENSIPUP00000030001	Glutamic acid-rich protein-like isoform X1.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.620
LOC108272534	plppr3	ENSIPUP00000006239	ENSIPUP00000020388	Glutamic acid-rich protein-like isoform X1.	Phospholipid phosphatase-related protein type 3.	0.489
LOC108272534	tex10	ENSIPUP00000006239	ENSIPUP00000029120	Glutamic acid-rich protein-like isoform X1.	Testis-expressed sequence 10 protein.	0.599
LOC108272534	wdr12	ENSIPUP00000006239	ENSIPUP00000031137	Glutamic acid-rich protein-like isoform X1.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.428
LOC108272534	wdr18	ENSIPUP00000006239	ENSIPUP00000020170	Glutamic acid-rich protein-like isoform X1.	WD repeat-containing protein 18.	0.618
bop1	LOC108272534	ENSIPUP00000018074	ENSIPUP00000006239	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Glutamic acid-rich protein-like isoform X1.	0.437
bop1	gnl2	ENSIPUP00000018074	ENSIPUP00000025277	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.979
bop1	gtpbp4	ENSIPUP00000018074	ENSIPUP00000021346	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.963
bop1	pes1	ENSIPUP00000018074	ENSIPUP00000030001	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
bop1	tex10	ENSIPUP00000018074	ENSIPUP00000029120	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Testis-expressed sequence 10 protein.	0.752
bop1	wdr12	ENSIPUP00000018074	ENSIPUP00000031137	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
bop1	wdr18	ENSIPUP00000018074	ENSIPUP00000020170	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat-containing protein 18.	0.943
cep152	LOC108272534	ENSIPUP00000030403	ENSIPUP00000006239	Centrosomal protein of 152 kDa isoform X1.	Glutamic acid-rich protein-like isoform X1.	0.437
cep152	gnl2	ENSIPUP00000030403	ENSIPUP00000025277	Centrosomal protein of 152 kDa isoform X1.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.979