Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rimbp2RIMS-binding protein 2 isoform X4. (1006 aa)    
Predicted Functional Partners:
LOC108257307
Regulating synaptic membrane exocytosis protein 2-like.
    
 0.953
LOC108257276
Regulating synaptic membrane exocytosis protein 2-like.
    
 0.953
RIMS2
Regulating synaptic membrane exocytosis protein 2-like.
    
 0.953
rims3
Regulating Synaptic membrane exocytosis protein 3.
    
 0.767
LOC108259070
Regulating synaptic membrane exocytosis protein 1-like isoform X7.
    
 0.767
rims1
Regulating synaptic membrane exocytosis protein 1 isoform X2.
    
 0.767
dhrs7b
Dehydrogenase/reductase SDR family member 7B; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.748
cbr1
Carbonyl reductase [NADPH] 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.746
tspo
Translocator protein isoform X1.
    
 0.734
TLCD1
Calfacilitin-like.
      
 0.699
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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