Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000006325annotation not available (138 aa)    
Predicted Functional Partners:
limch1
LIM and calponin homology domains-containing protein 1.
 
      0.894
ENSIPUP00000036166
annotation not available
 
 
    0.794
LOC108280720
Mitochondrial fission factor homolog A-like isoform X3.
    
 0.459
dvl2
Segment polarity protein dishevelled homolog DVL-2.
    
 0.452
LOC108268006
Segment polarity protein dishevelled homolog DVL-3-like.
    
 0.452
dvl3
Segment polarity protein dishevelled homolog DVL-3.
    
 0.452
dvl1
Segment polarity protein dishevelled homolog DVL-1 isoform X1.
    
 0.452
huwe1
E3 ubiquitin-protein ligase HUWE1 isoform X9.
    
   0.445
thyn1
Thymocyte Nuclear protein 1.
      
 0.436
LOC108268029
Vang-like protein.
    
 0.401
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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