Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tmem108Transmembrane protein 108. (473 aa)    
Predicted Functional Partners:
susd5
Sushi domain-containing protein 5.
      
 0.917
ctxn1
Cortexin-1.
      
 0.650
pik3r4
Phosphoinositide 3-kinase regulatory subunit 4 isoform X1.
      
 0.484
atp2c1
Calcium-transporting ATPase type 2C member 1; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.
      
 0.483
LOC108275286
cAMP-dependent protein kinase type II-beta regulatory subunit-like.
      
 0.483
LOC108256288
Protein asteroid homolog 1-like.
      
 0.482
LOC108256242
Protein asteroid homolog 1-like isoform X1.
      
 0.482
ASTE1
Protein asteroid homolog 1-like.
      
 0.482
tmem91
Transmembrane protein 91.
   
  
 0.481
syndig1l
Synapse differentiation-inducing gene protein 1-like.
   
  
 0.481
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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